Changelog

Feature updates and improvements​

Studios​

• Added direct Data Explorer browse link to mounted data items.
• Made Studio details page tabs routable.

Data Explorer​

• Highlight invalid custom datalinks.
• Removed folder validation.

Compute environments​

• Updated Azure service principal credentials.
• Disabled AWS and Google Batch spot instance auto retry.

Workflows​

• Patch workflow revision.

Launchpad​

• Render Parameters UI correctly with new schemas based on 2020-12 draft.
• Pipeline launch form: Delegate form creation to a form builder service.

API​

• Updated 204 pipeline schema response description.

General​

• Defined cache configuration once, only override changes.
• Upgraded to Angular 16.

Bug fixes​

General​

• Connection to Redis SSL server.
• Terminated by Tower error.

API​

• pairingId declaration in API schema.

Data Explorer​

• Copying empty list for cloud data links.
• Datalink status always null.

Launchpad​

• Visual glitches in launch form.

Studios​

• Updated last used field in compute environment when creating a data studio job.

Bug fixes​

Container building​

• Fixed build status completion of submit exception by @pditommaso in 3c3af360

Singularity​

• Fixed Singularity build mounts by @pditommaso in 3b338b29

Full changelog: https://github.com/seqeralabs/wave/compare/v1.12.2...v1.12.3

Feature updates and improvements​

Container building​

• Refactored container build service by @pditommaso in 1a858c12

General​

• Removed unused code by @pditommaso in 268c76ea

Bug fixes​

General​

• Fixed remove entries permanently from stream once consumed by @pditommaso in adfad9d6

Full Changelog: https://github.com/seqeralabs/wave/compare/v1.12.1...v1.12.2

Bug fixes​

General​

• Fixed stream check for new messages by @pditommaso in 16a7e256

Full changelog: https://github.com/seqeralabs/wave/compare/v1.12.0...v1.12.1

Feature updates and improvements​

Container building​

• Added trusted builds timeout by @pditommaso in https://github.com/seqeralabs/wave/pull/600
• Do not retry on build failure by @pditommaso in https://github.com/seqeralabs/wave/pull/632
• Removed unneeded timeout logic by @pditommaso in https://github.com/seqeralabs/wave/pull/633

Security scanning​

• Added containerImage in scan by @munishchouhan in https://github.com/seqeralabs/wave/pull/635
• Bumped Trivy to 0.55 by @pditommaso in https://github.com/seqeralabs/wave/pull/638
• Updated scan model by @pditommaso in https://github.com/seqeralabs/wave/pull/637

API​

• Added /v1alpha2/container/token by @munishchouhan in https://github.com/seqeralabs/wave/pull/609
• Added GET /v1alpha2/container/token in TypeSpec by @munishchouhan in https://github.com/seqeralabs/wave/pull/618
• Updated Wave rate limits by @gavinelder in https://github.com/seqeralabs/wave/pull/606

UI/UX​

• Improved container view page by @pditommaso in https://github.com/seqeralabs/wave/pull/615
• Added build in progress status in build page by @munishchouhan in https://github.com/seqeralabs/wave/pull/607

Performance​

• Improved blob cache reliability by @pditommaso in https://github.com/seqeralabs/wave/pull/596
• Increased cache-tower-client to 1 min by @pditommaso in https://github.com/seqeralabs/wave/pull/641
• Improved blob cache info by @pditommaso in https://github.com/seqeralabs/wave/pull/644

Registry​

• Improved registry auth error handling by @pditommaso in https://github.com/seqeralabs/wave/pull/628

General​

• Changed K8s delete job propagation policy to foreground by @munishchouhan in https://github.com/seqeralabs/wave/pull/595
• Refreshed Wave documentation by @jason-seqera in https://github.com/seqeralabs/wave/pull/516
• Links to Platform docs must be external to resolve by @jason-seqera in https://github.com/seqeralabs/wave/pull/613
• Added job manager by @pditommaso in https://github.com/seqeralabs/wave/pull/605
• Added bioinformatics example in docs by @munishchouhan in https://github.com/seqeralabs/wave/pull/621
• Converged job service by @pditommaso in https://github.com/seqeralabs/wave/pull/620
• Simplified tests by @pditommaso in https://github.com/seqeralabs/wave/pull/627
• Deferred resources cleanup by @pditommaso in https://github.com/seqeralabs/wave/pull/636
• Used public repo for s5cmd by @pditommaso in https://github.com/seqeralabs/wave/pull/639
• Added entropy to Cron services by @pditommaso in https://github.com/seqeralabs/wave/pull/640
• Improved job dispatcher by @pditommaso in https://github.com/seqeralabs/wave/pull/645
• Ran docker process in background by @pditommaso in https://github.com/seqeralabs/wave/pull/647

Bug fixes​

General​

• Fixed docs link by @jason-seqera in https://github.com/seqeralabs/wave/pull/611
• Fixed outdated Platform docs URLs on nextflow by @llewellyn-sl in https://github.com/seqeralabs/wave/pull/612
• Fixed failure duration by @pditommaso in https://github.com/seqeralabs/wave/pull/643
• Fixed K8s job status detection by @pditommaso in https://github.com/seqeralabs/wave/pull/630
• Fixed retry policy delay multiplier by @pditommaso in https://github.com/seqeralabs/wave/pull/629
• Fixed too many requests error by @pditommaso in https://github.com/seqeralabs/wave/pull/610

Breaking changes​

• Build status records used by this version are not compatible 1.11.x and earlier versions. No builds should be running while deploying this version

New Contributors​

• @gavinelder made their first contribution in https://github.com/seqeralabs/wave/pull/606

Full changelog: https://github.com/seqeralabs/wave/compare/v1.10.4...v1.12.0

Feature updates and improvements​

General​

• Added rate limiter to container request by @pditommaso in a3c63525

Full changelog: https://github.com/seqeralabs/wave/compare/v1.11.0...v1.11.1

Bug fixes​

Data Explorer​

• Added routing to enable task working directory navigation using Data Explorer in personal workspaces.

Compute environments​

• Hidden compute environment variables section actions when disabling the component (previously indicated that environment variables could be edited in this state).

General​

• Removed -/+ increment buttons from numeric input components in Platform, including compute environment and launch form interfaces.

Feature updates and improvements​

Container building​

• Added trusted builds timeout by @pditommaso in https://github.com/seqeralabs/wave/pull/600

API​

• Added /v1alpha2/container/containerIdby @munishchouhan in https://github.com/seqeralabs/wave/pull/609

UI/UX​

• Improved container view page by @pditommaso in https://github.com/seqeralabs/wave/pull/615

General​

• Changed K8s job deletion to foreground pods propagation by @munishchouhan in https://github.com/seqeralabs/wave/pull/595

Bug fixes​

General​

• Fixed too many requests error code by @pditommaso in https://github.com/seqeralabs/wave/pull/610

Full changelog: https://github.com/seqeralabs/wave/compare/v1.10.4...v1.11.0

Feature updates and improvements​

Compute environments​

• Added tag propagation for storage volumes to AWS launch template.

Infrastructure​

• Implemented custom H8 2nd-level cache to replace Redisson cache.
• Extended determineTextFormat helper function.

Bug fixes​

Launchpad​

• Disabled launch form submit button during form validation.
• Allow workDir edit during pipeline launch.

Data Explorer​

• Data Explorer preview for Azure Blob Storage files.

Compute environments​

• GCP resource leak.

Pipelines​

• Remote config read issue.

Infrastructure​

• Dependency vulnerabilities.

Version bumps​

Infrastructure​

• Bumped nf-launcher:j17-24.04.4

Bug fixes​

Infrastructure​

• Redis TLS connection issue.